diff create_features_from_gff3.xml @ 5:7610987e0c48 draft

planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/create_features_from_gff3.xml	Wed Mar 01 22:39:58 2017 -0500
@@ -0,0 +1,38 @@
+<?xml version="1.0"?>
+<tool id="edu.tamu.cpt2.webapollo.feat_from_gff3" name="GFF3 to Apollo Annotations" version="0.9">
+  <description></description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <code file="webapollo.py"/>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/create_features_from_gff3.py
+@ADMIN_AUTH@
+@ORG_OR_GUESS@
+
+"$__user_email__"
+$gff3_data
+> $output]]></command>
+  <inputs>
+    <expand macro="org_or_guess" />
+    <expand macro="gff3_input" />
+  </inputs>
+  <outputs>
+	<data format="tabular" name="output" label="Process and Error Log"/>
+  </outputs>
+  <help><![CDATA[
+**NOTA BENE**
+
+This is **incredibly, highly experimental**
+
+DO NOT:
+
+-  Run on gff3 referencing multiple reference sequences/contigs
+-  Expect it to work well
+-  Expect it to work at all
+
+@REFERENCES@
+]]></help>
+</tool>
+