Mercurial > repos > eric-rasche > apollo
comparison create_features_from_gff3.xml @ 5:7610987e0c48 draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
author | eric-rasche |
---|---|
date | Wed, 01 Mar 2017 22:39:58 -0500 |
parents | |
children | f9a6e151b3b4 |
comparison
equal
deleted
inserted
replaced
4:23ead6905145 | 5:7610987e0c48 |
---|---|
1 <?xml version="1.0"?> | |
2 <tool id="edu.tamu.cpt2.webapollo.feat_from_gff3" name="GFF3 to Apollo Annotations" version="0.9"> | |
3 <description></description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <code file="webapollo.py"/> | |
8 <expand macro="requirements"/> | |
9 <command detect_errors="aggressive"><![CDATA[ | |
10 python $__tool_directory__/create_features_from_gff3.py | |
11 @ADMIN_AUTH@ | |
12 @ORG_OR_GUESS@ | |
13 | |
14 "$__user_email__" | |
15 $gff3_data | |
16 > $output]]></command> | |
17 <inputs> | |
18 <expand macro="org_or_guess" /> | |
19 <expand macro="gff3_input" /> | |
20 </inputs> | |
21 <outputs> | |
22 <data format="tabular" name="output" label="Process and Error Log"/> | |
23 </outputs> | |
24 <help><![CDATA[ | |
25 **NOTA BENE** | |
26 | |
27 This is **incredibly, highly experimental** | |
28 | |
29 DO NOT: | |
30 | |
31 - Run on gff3 referencing multiple reference sequences/contigs | |
32 - Expect it to work well | |
33 - Expect it to work at all | |
34 | |
35 @REFERENCES@ | |
36 ]]></help> | |
37 </tool> | |
38 |