Mercurial > repos > eric-rasche > apollo
comparison export.py @ 7:f9a6e151b3b4 draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 52b9e5bf6a6efb09a5cb845ee48703651c644174
author | eric-rasche |
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date | Tue, 27 Jun 2017 04:05:17 -0400 |
parents | 7610987e0c48 |
children |
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6:8f76685cdfc8 | 7:f9a6e151b3b4 |
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1 #!/usr/bin/env python | 1 #!/usr/bin/env python |
2 from __future__ import print_function | |
3 import argparse | |
4 import json | |
2 import sys | 5 import sys |
6 from Bio import SeqIO | |
7 from BCBio import GFF | |
8 from webapollo import WAAuth, WebApolloInstance, CnOrGuess, GuessCn | |
9 from future import standard_library | |
10 standard_library.install_aliases() | |
3 try: | 11 try: |
4 import StringIO as io | 12 import StringIO as io |
5 except ImportError: | 13 except ImportError: |
6 import io | 14 import io |
7 | |
8 import json | |
9 import argparse | |
10 from Bio import SeqIO | |
11 from BCBio import GFF | |
12 from webapollo import WAAuth, WebApolloInstance, CnOrGuess, GuessCn | |
13 | 15 |
14 | 16 |
15 def export(org_cn, seqs): | 17 def export(org_cn, seqs): |
16 org_data = wa.organisms.findOrganismByCn(org_cn) | 18 org_data = wa.organisms.findOrganismByCn(org_cn) |
17 | 19 |