Mercurial > repos > eric-rasche > apollo
comparison macros.xml @ 5:7610987e0c48 draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
| author | eric-rasche |
|---|---|
| date | Wed, 01 Mar 2017 22:39:58 -0500 |
| parents | d4ae83dedb14 |
| children | f9a6e151b3b4 |
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| 4:23ead6905145 | 5:7610987e0c48 |
|---|---|
| 3 <xml name="requirements"> | 3 <xml name="requirements"> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.7">python</requirement> | 5 <requirement type="package" version="2.7">python</requirement> |
| 6 <requirement type="package" version="1.65">biopython</requirement> | 6 <requirement type="package" version="1.65">biopython</requirement> |
| 7 <requirement type="package" version="0.6.2">bcbiogff</requirement> | 7 <requirement type="package" version="0.6.2">bcbiogff</requirement> |
| 8 <requirement type="package" version="2.12.4">requests</requirement> | |
| 8 <yield/> | 9 <yield/> |
| 9 </requirements> | 10 </requirements> |
| 10 </xml> | 11 </xml> |
| 11 <token name="@DATA_DIR@">\$GALAXY_SHARED_DIR</token> | 12 <token name="@DATA_DIR@">\$GALAXY_SHARED_DIR</token> |
| 12 <token name="@EXT_URL@"> | 13 <token name="@EXT_URL@"> |
| 13 \$GALAXY_WEBAPOLLO_EXT_URL | 14 \$GALAXY_WEBAPOLLO_EXT_URL |
| 14 </token> | 15 </token> |
| 15 <token name="@URL@"> | 16 <token name="@URL@"> |
| 16 \$GALAXY_WEBAPOLLO_URL | 17 \$GALAXY_WEBAPOLLO_URL |
| 17 </token> | |
| 18 <token name="@USER_AUTH_REMOTE@"> | |
| 19 \$GALAXY_WEBAPOLLO_URL | |
| 20 $__user_email__ | |
| 21 "" | |
| 22 --remote_user REMOTE_USER | |
| 23 </token> | 18 </token> |
| 24 <token name="@ADMIN_AUTH@"> | 19 <token name="@ADMIN_AUTH@"> |
| 25 \$GALAXY_WEBAPOLLO_URL | 20 \$GALAXY_WEBAPOLLO_URL |
| 26 \$GALAXY_WEBAPOLLO_USER | 21 \$GALAXY_WEBAPOLLO_USER |
| 27 \$GALAXY_WEBAPOLLO_PASSWORD | 22 \$GALAXY_WEBAPOLLO_PASSWORD |
| 65 </param> | 60 </param> |
| 66 <when value="select"> | 61 <when value="select"> |
| 67 <param name="org_select" type="select" dynamic_options="galaxy_list_orgs(__trans__)" label="Organism" /> | 62 <param name="org_select" type="select" dynamic_options="galaxy_list_orgs(__trans__)" label="Organism" /> |
| 68 </when> | 63 </when> |
| 69 <when value="direct"> | 64 <when value="direct"> |
| 70 <param name="org_raw" type="text" label="Organism Common Name" /> | 65 <param name="org_raw" type="text" label="Organism Common Name" optional="False" /> |
| 71 </when> | 66 </when> |
| 72 <when value="auto_json"> | 67 <when value="auto_json"> |
| 73 <param name="org_file" type="data" format="json" label="Apollo Organism File" help="Will only fetch first organism" /> | 68 <param name="org_file" type="data" format="json" label="Apollo Organism File" help="Will only fetch first organism" /> |
| 74 </when> | 69 </when> |
| 75 </conditional> | 70 </conditional> |