Mercurial > repos > eric-rasche > apollo
comparison json2iframe.py @ 0:6002cc0df04e draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
| author | eric-rasche |
|---|---|
| date | Tue, 03 May 2016 13:38:55 -0400 |
| parents | |
| children | f7d57e56f322 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:6002cc0df04e |
|---|---|
| 1 #!/usr/bin/env python | |
| 2 import json | |
| 3 import argparse | |
| 4 | |
| 5 if __name__ == '__main__': | |
| 6 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') | |
| 7 parser.add_argument('apollo', help='Complete Apollo URL') | |
| 8 parser.add_argument('json', type=file, help='JSON Data') | |
| 9 | |
| 10 args = parser.parse_args() | |
| 11 | |
| 12 | |
| 13 # https://cpt.tamu.edu/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= | |
| 14 data = json.load(args.json) | |
| 15 if len(data) > 1: | |
| 16 raise Exception("More than one organism listed. TODO. Contact esr@tamu.edu") | |
| 17 | |
| 18 HTML_TPL = """ | |
| 19 <html> | |
| 20 <head> | |
| 21 <title>Embedded Apollo Access</title> | |
| 22 <style type="text/css"> | |
| 23 body {{ | |
| 24 margin: 0; | |
| 25 }} | |
| 26 iframe {{ | |
| 27 border: 0; | |
| 28 width: 100%; | |
| 29 height: 100% | |
| 30 }} | |
| 31 </style> | |
| 32 </head> | |
| 33 <body> | |
| 34 <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe> | |
| 35 </body> | |
| 36 </html> | |
| 37 """ | |
| 38 | |
| 39 print HTML_TPL.format(base_url=args.apollo, chrom="", orgId=data[0]['id']) |