Mercurial > repos > eric-rasche > apollo

annotate json2iframe.py @ 3:d4ae83dedb14 draft

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planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
author eric-rasche
date Thu, 12 Jan 2017 11:52:28 -0500
parents f7d57e56f322
children 23ead6905145
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
1 #!/usr/bin/env python
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
2 import json
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f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
diff changeset
3 import base64
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
4 import argparse
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
6 if __name__ == '__main__':
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
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7 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services')
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
8 parser.add_argument('apollo', help='Complete Apollo URL')
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
9 parser.add_argument('json', type=file, help='JSON Data')
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d4ae83dedb14 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
eric-rasche
parents: 1
diff changeset
10 parser.add_argument('external_apollo_url')
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
12 args = parser.parse_args()
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
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d4ae83dedb14 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
eric-rasche
parents: 1
diff changeset
14 # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks=
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
15 data = json.load(args.json)
6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
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f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
diff changeset
17 # This is base64 encoded to get past the toolshed's filters.
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
18 HTML_TPL = """
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f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
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19 PGh0bWw+PGhlYWQ+PHRpdGxlPkVtYmVkZGVkIEFwb2xsbyBBY2Nlc3M8L3RpdGxlPjxzdHlsZSB0
f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
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20 eXBlPSJ0ZXh0L2NzcyI+Ym9keSB7e21hcmdpbjogMDt9fSBpZnJhbWUge3tib3JkZXI6IDA7d2lk
f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
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21 dGg6IDEwMCU7aGVpZ2h0OiAxMDAlfX08L3N0eWxlPjwvaGVhZD48Ym9keT48aWZyYW1lIHNyYz0i
f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
diff changeset
22 e2Jhc2VfdXJsfS9hbm5vdGF0b3IvbG9hZExpbms/bG9jPXtjaHJvbX0mb3JnYW5pc209e29yZ0lk
f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
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23 fSZ0cmFja2xpc3Q9MSI+PC9pZnJhbWU+PC9ib2R5PjwvaHRtbD4K
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff changeset
24 """
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f7d57e56f322 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents: 0
diff changeset
25 HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', ''))
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6002cc0df04e planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
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d4ae83dedb14 planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
eric-rasche
parents: 1
diff changeset
27 print HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id'])