Mercurial > repos > elixir-it > vep86_vcf2maf
view vep-annotate-macros.xml @ 4:e82c4e48ecd7 draft default tip
Uploaded
author | elixir-it |
---|---|
date | Thu, 14 Nov 2019 08:54:04 +0000 |
parents | 786c9295d2be |
children |
line wrap: on
line source
<macros> <macro name="list-cache-annotate"> <param name="species" type="select" label="choose cache"> <option value="ailuropoda_melanoleuca --ASSEMBLY ailMel1">ailuropoda_melanoleuca --ASSEMBLY ailMel1</option> <option value="anas_platyrhynchos --ASSEMBLY BGI_duck_1.0">anas_platyrhynchos --ASSEMBLY BGI_duck_1.0</option> <option value="anolis_carolinensis --ASSEMBLY AnoCar2.0">anolis_carolinensis --ASSEMBLY AnoCar2.0</option> <option value="astyanax_mexicanus --ASSEMBLY AstMex102">astyanax_mexicanus --ASSEMBLY AstMex102</option> <option value="bos_taurus --ASSEMBLY UMD3.1">bos_taurus --ASSEMBLY UMD3.1</option> <option value="caenorhabditis_elegans --ASSEMBLY WBcel235">caenorhabditis_elegans --ASSEMBLY WBcel235</option> <option value="callithrix_jacchus --ASSEMBLY C_jacchus3.2.1">callithrix_jacchus --ASSEMBLY C_jacchus3.2.1</option> <option value="canis_familiaris --ASSEMBLY CanFam3.1">canis_familiaris --ASSEMBLY CanFam3.1</option> <option value="cavia_porcellus --ASSEMBLY cavPor3">cavia_porcellus --ASSEMBLY cavPor3</option> <option value="chlorocebus_sabaeus --ASSEMBLY ChlSab1.1">chlorocebus_sabaeus --ASSEMBLY ChlSab1.1</option> <option value="choloepus_hoffmanni --ASSEMBLY choHof1">choloepus_hoffmanni --ASSEMBLY choHof1</option> <option value="ciona_intestinalis --ASSEMBLY KH">ciona_intestinalis --ASSEMBLY KH</option> <option value="ciona_savignyi --ASSEMBLY CSAV2.0">ciona_savignyi --ASSEMBLY CSAV2.0</option> <option value="danio_rerio --ASSEMBLY GRCz10">danio_rerio --ASSEMBLY GRCz10</option> <option value="dasypus_novemcinctus --ASSEMBLY Dasnov3.0">dasypus_novemcinctus --ASSEMBLY Dasnov3.0</option> <option value="dipodomys_ordii --ASSEMBLY dipOrd1">dipodomys_ordii --ASSEMBLY dipOrd1</option> <option value="drosophila_melanogaster --ASSEMBLY BDGP6">drosophila_melanogaster --ASSEMBLY BDGP6</option> <option value="echinops_telfairi --ASSEMBLY TENREC">echinops_telfairi --ASSEMBLY TENREC</option> <option value="equus_caballus --ASSEMBLY EquCab2">equus_caballus --ASSEMBLY EquCab2</option> <option value="erinaceus_europaeus --ASSEMBLY HEDGEHOG">erinaceus_europaeus --ASSEMBLY HEDGEHOG</option> <option value="felis_catus --ASSEMBLY Felis_catus_6.2">felis_catus --ASSEMBLY Felis_catus_6.2</option> <option value="ficedula_albicollis --ASSEMBLY FicAlb_1.4">ficedula_albicollis --ASSEMBLY FicAlb_1.4</option> <option value="gadus_morhua --ASSEMBLY gadMor1">gadus_morhua --ASSEMBLY gadMor1</option> <option value="gallus_gallus --ASSEMBLY Gallus_gallus_5.0">gallus_gallus --ASSEMBLY Gallus_gallus_5.0</option> <option value="gasterosteus_aculeatus --ASSEMBLY BROADS1">gasterosteus_aculeatus --ASSEMBLY BROADS1</option> <option value="gorilla_gorilla --ASSEMBLY gorGor3.1">gorilla_gorilla --ASSEMBLY gorGor3.1</option> <option value="homo_sapiens --ASSEMBLY GRCh37">homo_sapiens --ASSEMBLY GRCh37</option> <option value="homo_sapiens --ASSEMBLY GRCh38" selected="true">homo_sapiens --ASSEMBLY GRCh38</option> <option value="ictidomys_tridecemlineatus --ASSEMBLY spetri2">ictidomys_tridecemlineatus --ASSEMBLY spetri2</option> <option value="latimeria_chalumnae --ASSEMBLY LatCha1">latimeria_chalumnae --ASSEMBLY LatCha1</option> <option value="lepisosteus_oculatus --ASSEMBLY LepOcu1">lepisosteus_oculatus --ASSEMBLY LepOcu1</option> <option value="loxodonta_africana --ASSEMBLY loxAfr3">loxodonta_africana --ASSEMBLY loxAfr3</option> <option value="macaca_mulatta --ASSEMBLY Mmul_8.0.1">macaca_mulatta --ASSEMBLY Mmul_8.0.1</option> <option value="macropus_eugenii --ASSEMBLY Meug_1.0">macropus_eugenii --ASSEMBLY Meug_1.0</option> <option value="meleagris_gallopavo --ASSEMBLY UMD2">meleagris_gallopavo --ASSEMBLY UMD2</option> <option value="microcebus_murinus --ASSEMBLY Mmur_2.0">microcebus_murinus --ASSEMBLY Mmur_2.0</option> <option value="monodelphis_domestica --ASSEMBLY BROADO5">monodelphis_domestica --ASSEMBLY BROADO5</option> <option value="mus_musculus_129s1svimj --ASSEMBLY 129S1_SvImJ_v1">mus_musculus_129s1svimj --ASSEMBLY 129S1_SvImJ_v1</option> <option value="mus_musculus_aj --ASSEMBLY A_J_v1">mus_musculus_aj --ASSEMBLY A_J_v1</option> <option value="mus_musculus_akrj --ASSEMBLY AKR_J_v1">mus_musculus_akrj --ASSEMBLY AKR_J_v1</option> <option value="mus_musculus_balbcj --ASSEMBLY BALB_cJ_v1">mus_musculus_balbcj --ASSEMBLY BALB_cJ_v1</option> <option value="mus_musculus_c3hhej --ASSEMBLY C3H_HeJ_v1">mus_musculus_c3hhej --ASSEMBLY C3H_HeJ_v1</option> <option value="mus_musculus_c57bl6nj --ASSEMBLY C57BL_6NJ_v1">mus_musculus_c57bl6nj --ASSEMBLY C57BL_6NJ_v1</option> <option value="mus_musculus_casteij --ASSEMBLY CAST_EiJ_v1">mus_musculus_casteij --ASSEMBLY CAST_EiJ_v1</option> <option value="mus_musculus_cbaj --ASSEMBLY CBA_J_v1">mus_musculus_cbaj --ASSEMBLY CBA_J_v1</option> <option value="mus_musculus_dba2j --ASSEMBLY DBA_2J_v1">mus_musculus_dba2j --ASSEMBLY DBA_2J_v1</option> <option value="mus_musculus_fvbnj --ASSEMBLY FVB_NJ_v1">mus_musculus_fvbnj --ASSEMBLY FVB_NJ_v1</option> <option value="mus_musculus_lpj --ASSEMBLY LP_J_v1">mus_musculus_lpj --ASSEMBLY LP_J_v1</option> <option value="mus_musculus_nodshiltj --ASSEMBLY NOD_ShiLtJ_v1">mus_musculus_nodshiltj --ASSEMBLY NOD_ShiLtJ_v1</option> <option value="mus_musculus_nzohlltj --ASSEMBLY NZO_HlLtJ_v1">mus_musculus_nzohlltj --ASSEMBLY NZO_HlLtJ_v1</option> <option value="mus_musculus_pwkphj --ASSEMBLY PWK_PhJ_v1">mus_musculus_pwkphj --ASSEMBLY PWK_PhJ_v1</option> <option value="mus_musculus --ASSEMBLY GRCm38">mus_musculus --ASSEMBLY GRCm38</option> <option value="mus_musculus_wsbeij --ASSEMBLY WSB_EiJ_v1">mus_musculus_wsbeij --ASSEMBLY WSB_EiJ_v1</option> <option value="mus_spretus_spreteij --ASSEMBLY SPRET_EiJ_v1">mus_spretus_spreteij --ASSEMBLY SPRET_EiJ_v1</option> <option value="mustela_putorius_furo --ASSEMBLY MusPutFur1.0">mustela_putorius_furo --ASSEMBLY MusPutFur1.0</option> <option value="myotis_lucifugus --ASSEMBLY Myoluc2.0">myotis_lucifugus --ASSEMBLY Myoluc2.0</option> <option value="nomascus_leucogenys --ASSEMBLY Nleu1.0">nomascus_leucogenys --ASSEMBLY Nleu1.0</option> <option value="ochotona_princeps --ASSEMBLY pika">ochotona_princeps --ASSEMBLY pika</option> <option value="oreochromis_niloticus --ASSEMBLY Orenil1.0">oreochromis_niloticus --ASSEMBLY Orenil1.0</option> <option value="ornithorhynchus_anatinus --ASSEMBLY OANA5">ornithorhynchus_anatinus --ASSEMBLY OANA5</option> <option value="oryctolagus_cuniculus --ASSEMBLY OryCun2.0">oryctolagus_cuniculus --ASSEMBLY OryCun2.0</option> <option value="oryzias_latipes --ASSEMBLY MEDAKA1">oryzias_latipes --ASSEMBLY MEDAKA1</option> <option value="otolemur_garnettii --ASSEMBLY OtoGar3">otolemur_garnettii --ASSEMBLY OtoGar3</option> <option value="ovis_aries --ASSEMBLY Oar_v3.1">ovis_aries --ASSEMBLY Oar_v3.1</option> <option value="pan_troglodytes --ASSEMBLY CHIMP2.1.4">pan_troglodytes --ASSEMBLY CHIMP2.1.4</option> <option value="papio_anubis --ASSEMBLY PapAnu2.0">papio_anubis --ASSEMBLY PapAnu2.0</option> <option value="pelodiscus_sinensis --ASSEMBLY PelSin_1.0">pelodiscus_sinensis --ASSEMBLY PelSin_1.0</option> <option value="petromyzon_marinus --ASSEMBLY Pmarinus_7.0">petromyzon_marinus --ASSEMBLY Pmarinus_7.0</option> <option value="poecilia_formosa --ASSEMBLY PoeFor_5.1.2">poecilia_formosa --ASSEMBLY PoeFor_5.1.2</option> <option value="pongo_abelii --ASSEMBLY PPYG2">pongo_abelii --ASSEMBLY PPYG2</option> <option value="procavia_capensis --ASSEMBLY proCap1">procavia_capensis --ASSEMBLY proCap1</option> <option value="pteropus_vampyrus --ASSEMBLY pteVam1">pteropus_vampyrus --ASSEMBLY pteVam1</option> <option value="rattus_norvegicus --ASSEMBLY Rnor_6.0">rattus_norvegicus --ASSEMBLY Rnor_6.0</option> <option value="saccharomyces_cerevisiae --ASSEMBLY R64 --ASSEMBLY 1 --ASSEMBLY 1">saccharomyces_cerevisiae --ASSEMBLY R64 --ASSEMBLY 1 --ASSEMBLY 1</option> <option value="sarcophilus_harrisii --ASSEMBLY DEVIL7.0">sarcophilus_harrisii --ASSEMBLY DEVIL7.0</option> <option value="sorex_araneus --ASSEMBLY COMMON_SHREW1">sorex_araneus --ASSEMBLY COMMON_SHREW1</option> <option value="sus_scrofa --ASSEMBLY Sscrofa10.2">sus_scrofa --ASSEMBLY Sscrofa10.2</option> <option value="taeniopygia_guttata --ASSEMBLY taeGut3.2.4">taeniopygia_guttata --ASSEMBLY taeGut3.2.4</option> <option value="takifugu_rubripes --ASSEMBLY FUGU4">takifugu_rubripes --ASSEMBLY FUGU4</option> <option value="tarsius_syrichta --ASSEMBLY tarSyr1">tarsius_syrichta --ASSEMBLY tarSyr1</option> <option value="tetraodon_nigroviridis --ASSEMBLY TETRAODON8">tetraodon_nigroviridis --ASSEMBLY TETRAODON8</option> <option value="tupaia_belangeri --ASSEMBLY TREESHREW">tupaia_belangeri --ASSEMBLY TREESHREW</option> <option value="tursiops_truncatus --ASSEMBLY turTru1">tursiops_truncatus --ASSEMBLY turTru1</option> <option value="vicugna_pacos --ASSEMBLY vicPac1">vicugna_pacos --ASSEMBLY vicPac1</option> <option value="xenopus_tropicalis --ASSEMBLY JGI_4.2">xenopus_tropicalis --ASSEMBLY JGI_4.2</option> <option value="xiphophorus_maculatus --ASSEMBLY Xipmac4.4.2">xiphophorus_maculatus --ASSEMBLY Xipmac4.4.2</option> </param> </macro> </macros>