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#This is a sample file distributed with Galaxy that enables tools
#to use a directory vcf file for covacs sequences data files. You will need
#to create these data files and then create a vcf_loc.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The vcf_loc.loc
#file has this format (longer white space characters are TAB characters):
#
#<unique_id>	<display_name>	<file_path>
#
#So, for example, if you had vcf file  stored in 
#/export/resource/, 
#then the covacs_vcf.loc entry would look like this:
#
#hapmap	hapmap   /export/resource/hapmap.vcf
#
#and your /export/resource directory
#would contain hapmap.vcf.
#
#
#Your covacs_vcf.loc file should include an entry per line for each
#index set you have stored. The "file" in the path does not actually
#exist, but it is the prefix for the actual index files. 
#Note that for backwards compatibility with workflows, the unique ID of
#an entry must be the path that was in the original loc file, because that
#is the value stored in the workflow for that parameter.
#
#hapmap	hapmap	/export/resources/hapmap.vcf
#1000G	1000G	/export/resources/1000G.vcf