Mercurial > repos > elixir-it > covacs_apply_recalibrator

diff covacs_ApplyRecalibrator.xml @ 2:f47e8d9b7f2e draft default tip

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Uploaded
author elixir-it
date Wed, 02 Oct 2019 04:29:44 -0400
parents c785cec34cdc
children
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--- a/covacs_ApplyRecalibrator.xml	Thu Nov 15 15:54:51 2018 -0500
+++ b/covacs_ApplyRecalibrator.xml	Wed Oct 02 04:29:44 2019 -0400
@@ -1,5 +1,5 @@
  <tool id="covacs_ApplyRecalibrator" name="covacs_ApplyRecalibrator" version="3.8">
-  <description>gatk ApplyRecalibrator wrapper </description>
+  <description>gatk ApplyRecalibrator wrapper for covacs</description>
   <macros>
 	<import>bed_macros.xml</import>
   </macros>
@@ -9,7 +9,7 @@
   <command>
     <![CDATA[
 	 ### call the .sh to untar the package 
-        sh $__tool_directory__/mv_untar_gatk.sh &&	
+	 bash $__tool_directory__/mv_untar_gatk.sh &> $log &&