Mercurial > repos > elixir-it > covacs_apply_recalibrator

comparison covacs_ApplyRecalibrator.xml @ 2:f47e8d9b7f2e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author elixir-it
date Wed, 02 Oct 2019 04:29:44 -0400
parents c785cec34cdc
children
comparison
equal deleted inserted replaced
1:48dc4c9bc497 2:f47e8d9b7f2e
1 <tool id="covacs_ApplyRecalibrator" name="covacs_ApplyRecalibrator" version="3.8"> 1 <tool id="covacs_ApplyRecalibrator" name="covacs_ApplyRecalibrator" version="3.8">
2 <description>gatk ApplyRecalibrator wrapper </description> 2 <description>gatk ApplyRecalibrator wrapper for covacs</description>
3 <macros> 3 <macros>
4 <import>bed_macros.xml</import> 4 <import>bed_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="3.8" >gatk</requirement> 7 <requirement type="package" version="3.8" >gatk</requirement>
8 </requirements> 8 </requirements>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 ### call the .sh to untar the package 11 ### call the .sh to untar the package
12 sh $__tool_directory__/mv_untar_gatk.sh && 12 bash $__tool_directory__/mv_untar_gatk.sh &> $log &&
13 13
14 14
15 15
16 #if $bed_source.bed_source_selector == "history" and $bed_source.bed_history 16 #if $bed_source.bed_source_selector == "history" and $bed_source.bed_history
17 ln -s $bed_source.bed_history region.bed && 17 ln -s $bed_source.bed_history region.bed &&