Mercurial > repos > eduardo > predsi

diff PredSi.xml @ 4:dda118a96cb0 draft

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planemo upload
author eduardo
date Fri, 30 Sep 2016 10:54:37 -0400
parents 640b18ca4e64
children f66c6b1a7930
line wrap: on
line diff
--- a/PredSi.xml	Fri Sep 30 10:44:40 2016 -0400
+++ b/PredSi.xml	Fri Sep 30 10:54:37 2016 -0400
@@ -5,9 +5,7 @@
         <exit_code range="1:" />
     </stdio>
     <command><![CDATA[
-    _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} &amp;&amp;
-        export _JAVA_OPTIONS &amp;&amp;
-        java -jar $__tool_directory__/JSPP.jar $__tool_directory__/tool-data/eukarya.smx $input1 $output1
+    _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} && export _JAVA_OPTIONS && java -jar $__tool_directory__/JSPP.jar $__tool_directory__/tool-data/eukarya.smx $input1 $output1
     ]]></command>
     <inputs>
         <param type="data" name="input1" format="fasta" label="Sequence Fasta"/>