Mercurial > repos > eduardo > mergegffs
changeset 9:79d6bb2e6a5d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mergegffs commit b370006ad76357c5f9014e0af87205737197ace2
| author | eduardo |
|---|---|
| date | Sat, 08 Apr 2017 18:17:27 -0400 |
| parents | 072ab1b781d8 |
| children | 8d0c12c9241d |
| files | mergegffs.py mergegffs.xml |
| diffstat | 2 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/mergegffs.py Sat Apr 08 15:29:36 2017 -0400 +++ b/mergegffs.py Sat Apr 08 18:17:27 2017 -0400 @@ -13,6 +13,7 @@ parser.add_argument('-m','--genemap', help="mapping of genes to transcripts") parser.add_argument('-p','--peptides',required=True, help="peptide prediction gff") parser.add_argument('-b','--blastp', help="blastp outfmt6 results for peptides") + parser.add_argument('-x','--blastx', help="blastx outfmt6 results for transcripts") parser.add_argument('-f','--pfam', help="hmmer results for peptides") parser.add_argument('-t','--tmhmm', help="tmhmm results for peptides") parser.add_argument('-s','--signalP', help="signalP results for peptides")
--- a/mergegffs.xml Sat Apr 08 15:29:36 2017 -0400 +++ b/mergegffs.xml Sat Apr 08 18:17:27 2017 -0400 @@ -74,12 +74,12 @@ </outputs> <tests> <test> - <param name="gff" ftype="gff" value="Trinity.fasta.transdecoder.gff3" /> - <param name="blastp" ftype="tabular" value="swissprot.blastp.outfmt6" /> - <param name="blastx" ftype="tabular" value="swissprot.blastx.outfmt6" /> - <param name="hmmscan" ftype="txt" value="TrinotatePFAM.out" /> - <param name="tmhmm" ftype="tabular" value="tmhmm.out" /> - <param name="signalp" ftype="tabular" value="signalp.out" /> + <param name="gff" value="Trinity.fasta.transdecoder.gff3" /> + <param name="blastp" value="swissprot.blastp.outfmt6" /> + <param name="blastx" value="swissprot.blastx.outfmt6" /> + <param name="hmmscan" value="TrinotatePFAM.out" /> + <param name="tmhmm" value="tmhmm.out" /> + <param name="signalp" value="signalp.out" /> <param name="keep_sqlite" value="false" /> <output name="output" file="output.gff" /> </test>