Mercurial > repos > eduardo > download_and_align

changeset 22:d4b97324deb3

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dependencies only allowed same repository
author Eduardo <eduardoalves@abdn.ac.uk>
date Tue, 04 Aug 2015 12:30:23 +0100
parents 083c25559b6b
children 0bef3e97ff79
files download_align.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/download_align.xml	Tue Aug 04 12:01:09 2015 +0100
+++ b/download_align.xml	Tue Aug 04 12:30:23 2015 +0100
@@ -3,7 +3,7 @@
   <requirements>
       <requirement type="package" version="1.8">cutadapt</requirement>
       <requirement type="package" version="2.2.4">bowtie2</requirement>
-      <requirement type="package" version="0.1.19">samtools</requirement>
+      <requirement type="package" version="0.1.18">samtools</requirement>
   </requirements>
   <command>
   #set index_path = ''
--- a/tool_dependencies.xml	Tue Aug 04 12:01:09 2015 +0100
+++ b/tool_dependencies.xml	Tue Aug 04 12:30:23 2015 +0100
@@ -1,13 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="bowtie2" version="2.2.4" >
-      <repository name="package_bowtie_2_2_4" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu"  />
+      <repository name="package_bowtie_2_2_4" owner="devteam" />
     </package>
     <package name="samtools" version="0.1.18">
       <repository name="package_samtools_0_1_18" owner="devteam"  />
     </package>
     <package name="cutadapt" version="1.8">
-      <repository name="package_cutadapt_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+      <repository name="package_cutadapt_1_8" owner="iuc"  />
     </package>
 </tool_dependency>