diff static/js/editgff.js @ 4:92921dfea0b5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/static/js/editgff.js	Sat Jun 24 14:55:25 2017 -0400
@@ -0,0 +1,68 @@
+var jsonobj=[]
+ $.ajax({url: "gff.json", success: function(result){
+        jsonobj = result;
+    }});
+
+
+function merge_prediction() {
+    var lpart = document.getElementById("lpart").value;
+    var rpart = document.getElementById("rpart").value;
+    edit_annot(lpart,rpart);
+}
+
+
+
+
+function edit_annot(lpart,rpart) {
+     for (var i = jsonobj.length -1; i >= 0 ; i--) {
+        if (jsonobj[i].attributes.hasOwnProperty("Parent")) {
+            if (jsonobj[i].attributes.Parent[0] === lpart){
+                if (jsonobj[i].featuretype == "three_prime_UTR") {
+                    jsonobj.splice(i,1);
+                    console.log("removed lpart three_prime_UTR");
+                }
+                else {
+                    jsonobj[i].attributes.Parent[0] = '.'.join(lpart,1);
+                }
+            }
+            if (jsonobj[i].attributes.Parent[0] === rpart){
+                if (jsonobj[i].featuretype == "five_prime_UTR") {
+                    jsonobj.splice(i,1);
+                    console.log("removed rpart five_prime_UTR");
+                }
+                else {
+                    jsonobj[i].attributes.Parent[0] = '.'.join(lpart,1);
+                }
+            }
+        }
+
+    };
+}
+
+function export_gff() {
+    var text="";
+    var line="";
+    for (var i=0;i<jsonobj.length;i++){
+        var attributes="";
+        for (var attribute in jsonobj[i].attributes){
+            attributes=attribute+'='+jsonobj[i].attributes[attribute][0]+';';
+        }
+        line = jsonobj[i].seqid+'\t'+
+        jsonobj[i].source+'\t'+
+        jsonobj[i].featuretype+'\t'+
+        jsonobj[i].start+'\t'+
+        jsonobj[i].end+'\t'+
+        jsonobj[i].score+'\t'+
+        jsonobj[i].strand+'\t'+
+        jsonobj[i].frame+'\t'+
+        attributes;
+        text=text+line+'\'';
+    }
+    var gfffile = new Blob([text], {type: "text/plain;charset=utf-8"});
+    var blob = new Blob([text], {type: "text/plain;charset=utf-8"});
+    var link = document.createElement('a');
+    link.setAttribute('href', window.URL.createObjectURL(blob));
+    link.setAttribute('download', "gff_export");
+    link.click();
+}
+