diff annotateviz.xml @ 3:3302f18f9e16 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty

--- a/annotateviz.xml	Sat Jun 17 14:43:40 2017 -0400
+++ b/annotateviz.xml	Sat Jun 17 15:10:53 2017 -0400
@@ -14,11 +14,10 @@
 --outdir $output.files_path
 $trackxml &&
 ##  $output.files_path/index.html $output;
-python  $__tool_directory__/annotateviz.py $db > $__tool_directory__/trans.json &&
+python  $__tool_directory__/annotateviz.py -d $db -j ${output.files_path}/trans.json &&
 sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output &&
 cp $__tool_directory__/static/js/gff_app.js ${output.files_path} &&
-cp $__tool_directory__/static/css/main.css ${output.files_path} &&
-cp $__tool_directory__/trans.json ${output.files_path};
+cp $__tool_directory__/static/css/main.css ${output.files_path};
 ]]></command>
   <configfiles>
       <configfile name="trackxml"><![CDATA[<?xml version="1.0"?>