comparison annotateviz.xml @ 3:3302f18f9e16 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty

2:31e855c95936

--jbrowse \${JBROWSE_SOURCE_DIR}
--standalone
--outdir $output.files_path
$trackxml &&
##  $output.files_path/index.html $output;
python  $__tool_directory__/annotateviz.py $db > $__tool_directory__/trans.json &&
sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output &&
cp $__tool_directory__/static/js/gff_app.js ${output.files_path} &&
cp $__tool_directory__/static/css/main.css ${output.files_path} &&
cp $__tool_directory__/trans.json ${output.files_path};
]]></command>
  <configfiles>
      <configfile name="trackxml"><![CDATA[<?xml version="1.0"?>
<root>
    <metadata>

3:3302f18f9e16

--jbrowse \${JBROWSE_SOURCE_DIR}
--standalone
--outdir $output.files_path
$trackxml &&
##  $output.files_path/index.html $output;
python  $__tool_directory__/annotateviz.py -d $db -j ${output.files_path}/trans.json &&
sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output &&
cp $__tool_directory__/static/js/gff_app.js ${output.files_path} &&
cp $__tool_directory__/static/css/main.css ${output.files_path};
]]></command>
  <configfiles>
      <configfile name="trackxml"><![CDATA[<?xml version="1.0"?>
<root>
    <metadata>