Mercurial > repos > eduardo > annotateviz

annotate static/js/editgff.js @ 6:9a09f7072ed5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 92d0101d8677f60a314611d325ca51a809a545d7-dirty
author eduardo
date Tue, 27 Jun 2017 08:12:24 -0400
parents 92921dfea0b5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
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92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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1 var jsonobj=[]
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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2 $.ajax({url: "gff.json", success: function(result){
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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3 jsonobj = result;
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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4 }});
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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7 function merge_prediction() {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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8 var lpart = document.getElementById("lpart").value;
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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9 var rpart = document.getElementById("rpart").value;
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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10 edit_annot(lpart,rpart);
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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11 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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16 function edit_annot(lpart,rpart) {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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17 for (var i = jsonobj.length -1; i >= 0 ; i--) {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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18 if (jsonobj[i].attributes.hasOwnProperty("Parent")) {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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19 if (jsonobj[i].attributes.Parent[0] === lpart){
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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20 if (jsonobj[i].featuretype == "three_prime_UTR") {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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21 jsonobj.splice(i,1);
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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22 console.log("removed lpart three_prime_UTR");
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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23 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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24 else {
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9a09f7072ed5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 92d0101d8677f60a314611d325ca51a809a545d7-dirty
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25 jsonobj[i].attributes.Parent[0] = lpart+'.1';
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26 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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27 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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28 if (jsonobj[i].attributes.Parent[0] === rpart){
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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29 if (jsonobj[i].featuretype == "five_prime_UTR") {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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30 jsonobj.splice(i,1);
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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31 console.log("removed rpart five_prime_UTR");
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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32 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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33 else {
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9a09f7072ed5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 92d0101d8677f60a314611d325ca51a809a545d7-dirty
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34 jsonobj[i].attributes.Parent[0] = lpart+'.1'
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35 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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36 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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37 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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38
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39 };
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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40 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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42 function export_gff() {
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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43 var text="";
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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44 var line="";
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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45 for (var i=0;i<jsonobj.length;i++){
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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46 var attributes="";
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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47 for (var attribute in jsonobj[i].attributes){
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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48 attributes=attribute+'='+jsonobj[i].attributes[attribute][0]+';';
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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49 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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50 line = jsonobj[i].seqid+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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51 jsonobj[i].source+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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52 jsonobj[i].featuretype+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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53 jsonobj[i].start+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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54 jsonobj[i].end+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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55 jsonobj[i].score+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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56 jsonobj[i].strand+'\t'+
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57 jsonobj[i].frame+'\t'+
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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58 attributes;
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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59 text=text+line+'\'';
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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60 }
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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61 var gfffile = new Blob([text], {type: "text/plain;charset=utf-8"});
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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62 var blob = new Blob([text], {type: "text/plain;charset=utf-8"});
92921dfea0b5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc
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63 var link = document.createElement('a');
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64 link.setAttribute('href', window.URL.createObjectURL(blob));
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65 link.setAttribute('download', "gff_export");
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66 link.click();
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67 }
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