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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty
author eduardo
date Sat, 17 Jun 2017 14:43:40 -0400
parents 7537482eed36
children 92921dfea0b5
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7537482eed36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty
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1 <!doctype html>
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2 <html ng-app="app">
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3 <head>
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4 <script src="http://ajax.googleapis.com/ajax/libs/angularjs/1.4.3/angular.js"></script>
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5 <script src="http://ajax.googleapis.com/ajax/libs/angularjs/1.4.3/angular-touch.js"></script>
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6 <script src="http://ajax.googleapis.com/ajax/libs/angularjs/1.4.3/angular-animate.js"></script>
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7 <script src="http://ui-grid.info/docs/grunt-scripts/csv.js"></script>
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8 <script src="http://ui-grid.info/docs/grunt-scripts/pdfmake.js"></script>
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9 <script src="http://ui-grid.info/docs/grunt-scripts/vfs_fonts.js"></script>
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10 <script src="https://cdn.rawgit.com/angular-ui/bower-ui-grid/master/ui-grid.min.js"></script>
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11 <link rel="stylesheet" href="https://cdn.rawgit.com/angular-ui/bower-ui-grid/master/ui-grid.min.css" type="text/css">
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12 <link rel="stylesheet" href="main.css" type="text/css">
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13 <link rel="stylesheet" type="text/css" href="css/genome.css">
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14 </head>
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15 <body>
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16
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17 <div ng-controller="MainCtrl">
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18
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19 <div ui-grid="gridOptions" ui-grid-pagination ui-grid-grouping ui-grid-exporter class="grid"></div>
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20 </div>
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21
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22 <div id="GenomeBrowser" style="height: 100%; width: 100%; padding: 0; border: 0;"></div>
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23 <div style="display: none">JBrowseDefaultMainPage</div>
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24 <script type="text/javascript">
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25 // jshint unused: false
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26 var dojoConfig = {
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27 async: true,
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28 baseUrl: './src',
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29 has: {
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30 'host-node': false // Prevent dojo from being fooled by Electron
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31 }
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32 };
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33 // Move Electron's require out before loading Dojo
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34 if(window.process&&process.versions&&process.versions.electron) {
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35 window.electronRequire = require;
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36 delete window.require;
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37 }
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38 </script>
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39 <script type="text/javascript" src="src/dojo/dojo.js"></script>
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40 <script type="text/javascript" src="src/JBrowse/init.js"></script>
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41 <script type="text/javascript">
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42 var hdaId = 'input_db' //for source for grid data
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43 window.onerror=function(msg){
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44 if( document.body )
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45 document.body.setAttribute("JSError",msg);
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46 }
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47
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48 // puts the main Browser object in this for convenience. feel
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49 // free to move it into function scope if you want to keep it
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50 // out of the global namespace
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51 var JBrowse;
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52 require(['JBrowse/Browser', 'dojo/io-query', 'dojo/json' ],
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53 function (Browser,ioQuery,JSON) {
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54 // the initial configuration of this JBrowse
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55 // instance
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56
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57 // NOTE: this initial config is the same as any
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58 // other JBrowse config in any other file. this
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59 // one just sets defaults from URL query params.
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60 // If you are embedding JBrowse in some other app,
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61 // you might as well just set this initial config
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62 // to something like { include: '../my/dynamic/conf.json' },
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63 // or you could put the entire
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64 // dynamically-generated JBrowse config here.
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65
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66 // parse the query vars in the page URL
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67 var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );
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68
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69 var config = {
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70 containerID: "GenomeBrowser",
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71
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72 dataRoot: queryParams.data,
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73 queryParams: queryParams,
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74 location: queryParams.loc,
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75 forceTracks: queryParams.tracks,
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76 initialHighlight: queryParams.highlight,
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77 show_nav: queryParams.nav,
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78 show_tracklist: queryParams.tracklist,
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79 show_overview: queryParams.overview,
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80 show_menu: queryParams.menu,
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81 show_tracklabels: queryParams.tracklabels,
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82 highResolutionMode: queryParams.highres,
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83 stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } },
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84 makeFullViewURL: function( browser ) {
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85
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86 // the URL for the 'Full view' link
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87 // in embedded mode should be the current
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88 // view URL, except with 'nav', 'tracklist',
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89 // and 'overview' parameters forced to 1.
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90
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91 return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });
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92 },
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93 updateBrowserURL: true
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94 };
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95
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96 //if there is ?addFeatures in the query params,
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97 //define a store for data from the URL
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98 if( queryParams.addFeatures ) {
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99 config.stores.url.features = JSON.parse( queryParams.addFeatures );
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100 }
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101
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102 // if there is ?addTracks in the query params, add
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103 // those track configurations to our initial
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104 // configuration
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105 if( queryParams.addTracks ) {
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106 config.tracks = JSON.parse( queryParams.addTracks );
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107 }
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108
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109 // if there is ?addStores in the query params, add
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110 // those store configurations to our initial
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111 // configuration
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112 if( queryParams.addStores ) {
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113 config.stores = JSON.parse( queryParams.addStores );
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114 }
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115
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116 // create a JBrowse global variable holding the JBrowse instance
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117 JBrowse = new Browser( config );
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118 });
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119 </script>
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120
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121
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122
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123 </script>
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124 <script src="gff_app.js"></script>
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125 </body>
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126 </html>