Mercurial > repos > ebi-gxa > update_marker_file
changeset 2:76d98021de74 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 15:12:33 +0000 |
| parents | 9e3935936896 |
| children | d4f45397c204 |
| files | garnett_macros.xml update_marker_file.xml |
| diffstat | 2 files changed, 12 insertions(+), 2 deletions(-) [+] |
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--- a/garnett_macros.xml Thu Apr 16 08:54:33 2020 +0000 +++ b/garnett_macros.xml Fri Apr 24 15:12:33 2020 +0000 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.3">garnett-cli</requirement> + <requirement type="package" version="0.0.5">garnett-cli</requirement> <yield/> </requirements> </xml>
--- a/update_marker_file.xml Thu Apr 16 08:54:33 2020 +0000 +++ b/update_marker_file.xml Fri Apr 24 15:12:33 2020 +0000 @@ -5,7 +5,17 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - update_marker_file.R --marker-list-obj '${marker_list_obj}' --marker-check-file '${marker_check_file}' --summary-col '${summary_col}' --cell-type-col '${cell_type_col}' --gene-id-col '${gene_id_col}' --updated-marker-file '${updated_marker_file}' + update_marker_file.R --marker-list-obj '${marker_list_obj}' --marker-check-file '${marker_check_file}' --updated-marker-file '${updated_marker_file}' + + #if $summary_col + --summary-col '${summary_col}' + #end if + #if $cell_type_col + --cell-type-col '${cell_type_col}' + #end if + #if $gene_id_col + --gene-id-col '${gene_id_col}' + #end if ]]></command> <inputs> <param type="data" name="marker_list_obj" label="Marker list object" format="rdata" help="Serialised object containing markers list produced by garnett_transform_markers" />