Mercurial > repos > ebi-gxa > seurat_scale_data

diff seurat_scale_data.xml @ 3:412e62cb6cf7 draft default tip

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planemo upload commit 34c30124158749b9eef51d5f323b608a503e7940
author ebi-gxa
date Sun, 01 Oct 2023 09:07:05 +0000
parents 52ccdd3fb5e8
children
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--- a/seurat_scale_data.xml	Thu Apr 16 09:34:07 2020 +0000
+++ b/seurat_scale_data.xml	Sun Oct 01 09:07:05 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="seurat_scale_data" name="Seurat ScaleData" version="@SEURAT_VERSION@_@VERSION@+galaxy0">
+<tool id="seurat_scale_data" name="Seurat ScaleData" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
     <description>scale and center genes</description>
     <macros>
         <import>seurat_macros.xml</import>
@@ -70,8 +70,14 @@
 
     <tests>
         <test>
-            <param name="input" ftype="rdata" value="out_findvar.rds"/>
-            <output name="rds_seurat_file" ftype="rdata" value="out_scale.rds" compare="sim_size"/>
+            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-fvg.rds"/>
+            <param name="vars_to_regress" value="nCount_RNA" />
+            <param name="use_umi" value="True" />
+            <output name="rds_seurat_file" ftype="rdata">
+              <assert_contents>
+                <has_size value="4233990" delta="200000"/>
+              </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[