comparison seurat_scale_data.xml @ 3:412e62cb6cf7 draft default tip

planemo upload commit 34c30124158749b9eef51d5f323b608a503e7940

2:52ccdd3fb5e8

<tool id="seurat_scale_data" name="Seurat ScaleData" version="@SEURAT_VERSION@_@VERSION@+galaxy0">
    <description>scale and center genes</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

      <expand macro="output_files"/>
    </outputs>

    <tests>
        <test>
            <param name="input" ftype="rdata" value="out_findvar.rds"/>
            <output name="rds_seurat_file" ftype="rdata" value="out_scale.rds" compare="sim_size"/>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

3:412e62cb6cf7

<tool id="seurat_scale_data" name="Seurat ScaleData" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
    <description>scale and center genes</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

      <expand macro="output_files"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-fvg.rds"/>
            <param name="vars_to_regress" value="nCount_RNA" />
            <param name="use_umi" value="True" />
            <output name="rds_seurat_file" ftype="rdata">
              <assert_contents>
                <has_size value="4233990" delta="200000"/>
              </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark