Mercurial > repos > ebi-gxa > seurat_filter_cells
changeset 1:fda1f7579646 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 0a95e950ac73efdc9e84025ecb547e66fc3b83f6
author | ebi-gxa |
---|---|
date | Wed, 13 Mar 2019 12:50:47 -0400 |
parents | eb20971d191c |
children | 040ab5587f2a |
files | seurat_filter_cells.xml seurat_macros.xml |
diffstat | 2 files changed, 22 insertions(+), 0 deletions(-) [+] |
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--- a/seurat_filter_cells.xml Mon Mar 04 12:07:39 2019 -0500 +++ b/seurat_filter_cells.xml Wed Mar 13 12:50:47 2019 -0400 @@ -77,6 +77,8 @@ .. _Seurat: https://www.nature.com/articles/nbt.4096 .. _Satija Lab: https://satijalab.org/seurat/ +@VERSION_HISTORY@ + ]]></help> <expand macro="citations" /> </tool>
--- a/seurat_macros.xml Mon Mar 04 12:07:39 2019 -0500 +++ b/seurat_macros.xml Wed Mar 13 12:50:47 2019 -0400 @@ -22,9 +22,29 @@ <param name="dims_use" argument="--dims-use" min="1" optional="true" type="integer" label="PCA Dimensions to use" help="Number of PCs (dimensions) to use in construction of the SNN graph."/> </xml> + <token name="@VERSION_HISTORY@"><![CDATA[ +**Version history** + +0.0.1: Initial contribution. Maria Doyle, https://github.com/mblue9. + +2.3.1+galaxy0: Improved documentation and further exposition of all script's options. Pablo Moreno, Jonathan Manning and Ni Huang, Expression Atlas team https://www.ebi.ac.uk/gxa/home at +EMBL-EBI https://www.ebi.ac.uk/. Parts obtained from wrappers from Christophe Antoniewski(https://github.com/drosofff) and Lea Bellenger(https://github.com/bellenger-l). + ]]></token> + + <xml name="citations"> <citations> <citation type="doi">10.1038/nbt.4096</citation> + <citation type="bibtex"> + @misc{r-seurat-scripts.git, + author = {Jonathan Manning, Pablo Moreno, EBI Gene Expression Team}, + year = {2018}, + title = {Seurat-scripts: command line interface for Seurat}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/ebi-gene-expression-group/r-seurat-scripts.git}, + } + </citation> </citations> </xml> </macros>