Mercurial > repos > ebi-gxa > scanpy_compute_graph
changeset 1:ada6d9bd638d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy-scripts commit 41af6a6f7b0d302e0a1900d1ad8bc24718bfc84b
| author | ebi-gxa |
|---|---|
| date | Wed, 20 Mar 2019 12:02:05 -0400 |
| parents | c3c89fc3095a |
| children | 77f16c784c19 |
| files | scanpy-neighbours.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/scanpy-neighbours.xml Wed Mar 13 11:51:10 2019 -0400 +++ b/scanpy-neighbours.xml Wed Mar 20 12:02:05 2019 -0400 @@ -15,7 +15,7 @@ #if $settings.default == "false" -N '${settings.n_neighbours}' -m '${settings.method}' - -s '${settings.seed}' + -s '${settings.random_seed}' #if $settings.use_rep != "auto" -r '${settings.use_rep}' #end if @@ -51,7 +51,7 @@ <option value="gauss">Gaussian</option> </param> <param name="metric" argument="--metric" type="text" value="euclidean" label="Distance metric"/> - <param name="seed" argument="--random-seed" type="integer" value="0" label="Seed for random number generator"/> + <param name="random_seed" argument="--random-seed" type="integer" value="0" label="Seed for random number generator"/> </when> </conditional> </inputs> @@ -69,7 +69,7 @@ <param name="n_neighbours" value="15"/> <param name="n_pcs" value="50"/> <param name="knn" value="true"/> - <param name="seed" value="0"/> + <param name="random_seed" value="0"/> <param name="method" value="umap"/> <param name="metric" value="euclidean"/> <output name="output_h5" file="compute_graph.h5" ftype="h5" compare="sim_size"/>