Mercurial > repos > drosofff > msp_sr_bowtie_parser

changeset 12:e64fec3de201 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 14 Jun 2015 06:20:34 -0400
parents c327e2ed3322
children 634ad185484b
files sRbowtieParser.xml tool_dependencies.xml
diffstat 2 files changed, 11 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/sRbowtieParser.xml	Fri Jun 12 10:13:40 2015 -0400
+++ b/sRbowtieParser.xml	Sun Jun 14 06:20:34 2015 -0400
@@ -1,10 +1,11 @@
-<tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.4">
+<tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.1">
   <description></description>
   <requirements>
 	<requirement type="package" version="0.12.7">bowtie</requirement>
-        <requirement type="package" version="1.2">samtools</requirement>
+        <requirement type="package" version="0.1.18">samtools</requirement>
         <requirement type="package" version="0.7.7">pysam</requirement>
-        <requirement type="package" version="0.12.0">scipy</requirement>
+        <requirement type="package" version="1.9">numpy</requirement>
+        <requirement type="package" version="0.14">scipy</requirement>
  </requirements>
 <command interpreter="python">
         sRbowtieParser.py 
--- a/tool_dependencies.xml	Fri Jun 12 10:13:40 2015 -0400
+++ b/tool_dependencies.xml	Sun Jun 14 06:20:34 2015 -0400
@@ -3,13 +3,16 @@
   <package name="bowtie" version="0.12.7">
       <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="samtools" version="1.2">
-      <repository changeset_revision="77e0e0891773" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="0.1.18">
+      <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="pysam" version="0.7.7">
       <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="scipy" version="0.12.0">
-        <repository changeset_revision="774ce332a3d7" name="package_scipy_0_12_with_atlas" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="43cb426cb05d" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="scipy" version="0.14">
+        <repository changeset_revision="8494a6718d89" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>