Mercurial > repos > drosofff > msp_sr_bowtie_parser
changeset 16:bfeaf4415eba draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie_parser commit 30a73e24eabb05f9d46150fd03471ff853579ad2-dirty
| author | mvdbeek |
|---|---|
| date | Mon, 18 Apr 2016 09:41:34 -0400 |
| parents | a39761c27e77 |
| children | 7b5e0fba8e74 |
| files | sRbowtieParser.xml smRtools.pyc tool_dependencies.xml |
| diffstat | 3 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/sRbowtieParser.xml Mon Jun 29 05:54:17 2015 -0400 +++ b/sRbowtieParser.xml Mon Apr 18 09:41:34 2016 -0400 @@ -1,12 +1,12 @@ -<tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.5"> +<tool id="sRbowtieParser" name="Parse items in sRbowtie alignment" version="1.0.6"> <description></description> <requirements> <requirement type="package" version="0.12.7">bowtie</requirement> <requirement type="package" version="0.7.7">pysam</requirement> <requirement type="package" version="1.9">numpy</requirement> </requirements> -<command interpreter="python"> - sRbowtieParser.py +<command> + python sRbowtieParser.py #if $refGenomeSource.genomeSource == "history": --IndexSource $refGenomeSource.ownFile --ExtractDirective fastaSource @@ -27,7 +27,7 @@ #end for --alignmentLabel #for $i in $refGenomeSource.input_list - "$i.name" + "$i.element_identifier" #end for </command>
--- a/tool_dependencies.xml Mon Jun 29 05:54:17 2015 -0400 +++ b/tool_dependencies.xml Mon Apr 18 09:41:34 2016 -0400 @@ -7,6 +7,6 @@ <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="numpy" version="1.9"> - <repository changeset_revision="43cb426cb05d" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>