Mercurial > repos > drosofff > msp_sr_bowtie
changeset 11:88cdd6118bfe draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/ commit 763ba9879fe37a13d18d75a4a03150d3560a82f8
| author | drosofff |
|---|---|
| date | Mon, 28 Sep 2015 16:47:11 -0400 |
| parents | 950771c9b583 |
| children | a0bde9b84ca6 |
| files | sRbowtie.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 7 deletions(-) [+] |
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--- a/sRbowtie.xml Thu Jul 02 08:12:43 2015 -0400 +++ b/sRbowtie.xml Mon Sep 28 16:47:11 2015 -0400 @@ -1,8 +1,8 @@ -<tool id="bowtieForSmallRNA" name="sRbowtie" version="1.1.1"> +<tool id="bowtieForSmallRNA" name="sRbowtie" version="1.1.2"> <description>for FASTA small reads</description> <requirements> <requirement type="package" version="0.12.7">bowtie</requirement> - <!-- <requirement type="package" version="1.2">samtools</requirement> Should not be required, as samtools part of required gaalxy dependencies. --> + <requirement type="package" version="1.2">samtools</requirement> </requirements> <command interpreter="python"> sRbowtie.py --input $input --input-format $input.extension
--- a/tool_dependencies.xml Thu Jul 02 08:12:43 2015 -0400 +++ b/tool_dependencies.xml Mon Sep 28 16:47:11 2015 -0400 @@ -1,11 +1,9 @@ <?xml version="1.0"?> <tool_dependency> - <package name="bowtie" version="0.12.7"> - <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="bowtie" version="0.12.7"> + <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> -<!-- Remove samtools, as it should be part of every galaxy installation. <package name="samtools" version="1.2"> - <repository name="package_samtools_1_2" owner="iuc" prior_installation_required="False" /> + <repository changeset_revision="9cd278d52bb6" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> ---> </tool_dependency>