Mercurial > repos > drosofff > msp_sr_bowtie
changeset 8:67a7d18a3065 draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | drosofff |
|---|---|
| date | Mon, 29 Jun 2015 05:53:38 -0400 |
| parents | 5d82f9b15957 |
| children | 33629a3eb239 |
| files | sRbowtie.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/sRbowtie.xml Tue Jun 23 16:59:01 2015 -0400 +++ b/sRbowtie.xml Mon Jun 29 05:53:38 2015 -0400 @@ -2,7 +2,7 @@ <description>for FASTA small reads</description> <requirements> <requirement type="package" version="0.12.7">bowtie</requirement> - <requirement type="package" version="1.2">samtools</requirement> + <!-- <requirement type="package" version="1.2">samtools</requirement> Should not be required, as samtools part of required gaalxy dependencies. --> </requirements> <command interpreter="python"> sRbowtie.py --input $input --input-format $input.extension
--- a/tool_dependencies.xml Tue Jun 23 16:59:01 2015 -0400 +++ b/tool_dependencies.xml Mon Jun 29 05:53:38 2015 -0400 @@ -3,7 +3,9 @@ <package name="bowtie" version="0.12.7"> <repository changeset_revision="f0faa5eea2eb" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> +<!-- Remove samtools, as it should be part of every galaxy installation. <package name="samtools" version="1.2"> - <repository changeset_revision="77e0e0891773" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository name="package_samtools_1_2" owner="iuc" prior_installation_required="False" /> </package> +--> </tool_dependency>