Mercurial > repos > drosofff > msp_sr_bowtie

diff sRbowtie.py @ 2:316124e85b8d draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author mvdbeek
date Mon, 25 May 2015 12:44:36 -0400
parents b50d7228b678
children d123b6e6a633
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line diff
--- a/sRbowtie.py	Sun Mar 29 10:25:36 2015 -0400
+++ b/sRbowtie.py	Mon May 25 12:44:36 2015 -0400
@@ -52,7 +52,7 @@
                        index="path", output="path", pslots="4"):
     if input_format == "fasta":
         input_format = "-f"
-    elif input_format == "fastq":
+    elif (input_format == "fastq") or (input_format == "fastqsanger"):
         input_format = "-q"
     else:
         raise Exception('input format must be one of fasta or fastq')