Mercurial > repos > drosofff > msp_fasta_tabular_converter

changeset 3:403f0769fc1c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_fasta_tabular_converter commit 030207144f0811822dbdda9a10e036ff8e794d7c
author drosofff
date Fri, 25 Mar 2016 19:29:59 -0400
parents 87e27aa012d7
children 87c99e4af616
files fasta_tabular_converter.py
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/fasta_tabular_converter.py	Tue Mar 22 18:53:39 2016 -0400
+++ b/fasta_tabular_converter.py	Fri Mar 25 19:29:59 2016 -0400
@@ -26,7 +26,9 @@
             stringlist=[]
         else:
             stringlist.append(line[:-1])
-    seqdic["".join(stringlist)] +=  1 # for the last sequence
+    try:
+        seqdic["".join(stringlist)] +=  1 # for the last sequence
+    except: pass # in case file to convert is empty
     F.close()
     F = open(tabular, "w")
     for seq in sorted(seqdic, key=seqdic.get, reverse=True):
@@ -105,4 +107,4 @@
 if __name__ == "__main__":
     seqdic = defaultdict(int)
     args = Parser()
-    main (args.input, args.output, args.type)
\ No newline at end of file
+    main (args.input, args.output, args.type)