Mercurial > repos > drosofff > mississippi_gcc
changeset 9:256a0b1aa836 draft
Uploaded
| author | drosofff |
|---|---|
| date | Tue, 24 Jun 2014 11:35:34 -0400 |
| parents | f9032a866675 |
| children | 68eced5d147c |
| files | mississippi_gcc/annotation_collector.xml |
| diffstat | 1 files changed, 37 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mississippi_gcc/annotation_collector.xml Tue Jun 24 11:35:34 2014 -0400 @@ -0,0 +1,37 @@ +<tool id="annotation_collector" name="Collect Annotation counts" version="0.9.0"> + <description> from matched fasta files</description> + <command interpreter="python"> + annotation_collector.py + $out_file + $input1 $label1 + #for $q in $queries + ${q.input2} ${q.label2} + #end for + $title + </command> + <inputs> + <param name="title" type="text" label="Annotation Title"/> + <param name="input1" type="data" label="fasta file to annotate"/> + <param name="label1" type="text" label="category label"/> + <repeat name="queries" title="Additional fasta file and label"> + <param name="input2" type="data" label="Select" /> + <param name="label2" type="text" label="Label" /> + </repeat> + </inputs> + <outputs> + <data name="out_file" format="tabular" metadata_source="input1" label="Annotations"/> + </outputs> + <help> + +.. class:: warningmark + +**WARNING:** Be careful not to agregate datasets of different kinds (e.g., datasets must be matched fasta files). This tool does not check if the datasets being annotated are in the same format. + +----- + +**What it does** + +Generates Annotation Table from fasta files + + </help> +</tool> \ No newline at end of file