Mercurial > repos > dpryan79 > bwameth
changeset 18:352e0213806c draft
Uploaded
author | dpryan79 |
---|---|
date | Wed, 14 Sep 2016 07:53:18 -0400 |
parents | b55c12d26066 |
children | 54c3b261783b |
files | bwameth.xml |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/bwameth.xml Wed Sep 14 07:25:39 2016 -0400 +++ b/bwameth.xml Wed Sep 14 07:53:18 2016 -0400 @@ -38,7 +38,7 @@ #else: $single_or_paired.input_mate1 $single_or_paired.input_mate2 #end if - | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" output + | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" - output ]]> </command> <inputs> @@ -83,11 +83,11 @@ <tests> <test> <param name="referenceSource" value="history" /> - <param name="reference" value="ref.fa" /> + <param name="reference" value="ref.fa.gz" /> <param name="single_or_paired_opts" value="paired" /> <param name="input_mate1" value="t_R1.fastq.gz" /> <param name="input_mate2" value="t_R2.fastq.gz" /> - <output file="output.bam" ftype="bam" name="output" compare="sim_size" delta="10000"/> + <output file="output.bam" ftype="bam" name="output" lines_diff="2"/> </test> </tests> <help>