Mercurial > repos > diodupima > data_manager_coast_taxonomic_filters
changeset 18:52e4bea9cec8 draft
"planemo upload commit 8f9b7580dc80c99bc735ea899819ff1d109de311-dirty"
| author | diodupima |
|---|---|
| date | Thu, 15 Jul 2021 14:33:40 +0000 |
| parents | 5b00b9580e42 |
| children | 07437626e98f |
| files | data_manager_conf.xml tool-data/coast_taxonomic_filters.loc.sample tool_data_table_conf.xml.sample txids_dm.xml |
| diffstat | 4 files changed, 19 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager_conf.xml Thu Jul 15 14:10:32 2021 +0000 +++ b/data_manager_conf.xml Thu Jul 15 14:33:40 2021 +0000 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="txids_dm.xml" id="data_manager_taxonomic_filters"> + <data_manager tool_file="txids_dm.xml" id="taxonomic_filters"> <data_table name="coast_taxonomic_filters"> <output> <column name="value" />
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/coast_taxonomic_filters.loc.sample Thu Jul 15 14:33:40 2021 +0000 @@ -0,0 +1,10 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of coast_taxonomic_filters. You will need +#to create these data files and then create a coast_taxonomic_filters.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The coast_taxonomic_filters.loc +#file has this format (white space characters are TAB characters): +# +#value <name> <node_name> <path> +# +#2_2021_07_08_00_33_22 bac (taxid - 2) (date - 2021_07_08_00) bac 2/2_2021_07_07_23_57_17.txids
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Thu Jul 15 14:33:40 2021 +0000 @@ -0,0 +1,7 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <table name="coast_taxonomic_filters" comment_char="#" allow_duplicate_entries="False"> + <columns>value, name, node_name, path</columns> + <file path="tool-data/coast_taxonomic_filters.loc" /> + </table> +</tables> \ No newline at end of file
--- a/txids_dm.xml Thu Jul 15 14:10:32 2021 +0000 +++ b/txids_dm.xml Thu Jul 15 14:33:40 2021 +0000 @@ -1,9 +1,8 @@ -<tool id="data_manager_taxonomic_filters" name="COAST taxonomic filter generator" version="0.1" tool_type="manage_data"> +<tool id="taxonomic_filters" name="COAST taxonomic filter generator" version="0.1" tool_type="manage_data"> <description> </description> <requirements> <requirement type="package" version="0.8">taxonkit</requirement> - <requirement type="package" version="3.7">python</requirement> </requirements> <command>python3 '$__tool_directory__/ho2s.py' --file "${out_file}" --tool_data_table_name "coast_taxonomic_filters"</command> <inputs>