Mercurial > repos > diodupima > coast_search_blast
changeset 6:f064240f5e9c draft
"planemo upload commit 699e21438d7d173e81e8d60b5717dc1485785c7d-dirty"
author | diodupima |
---|---|
date | Fri, 09 Jul 2021 17:48:35 +0000 |
parents | a088f3dee63c |
children | 846be85dc0d0 |
files | macros.xml tool-data/diamond_database.loc.sample tool_data_table_conf.xml.sample |
diffstat | 3 files changed, 23 insertions(+), 0 deletions(-) [+] |
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--- a/macros.xml Thu Jul 08 18:13:38 2021 +0000 +++ b/macros.xml Fri Jul 09 17:48:35 2021 +0000 @@ -51,6 +51,12 @@ "$db" ]]></token> + <xml name="protein_db_diamond"> + <param name="db" type="select" optional="false" label="Diamond protein sequences database."> + <options from_data_table="diamond_database" /> + </param> + </xml> + <xml name="output_format"> <param name="outfmt" type="select" optional="true" multiple="true" display="checkboxes" label="Select outputs"> <option value="b" selected="true">Best Hits</option>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/diamond_database.loc.sample Fri Jul 09 17:48:35 2021 +0000 @@ -0,0 +1,9 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of Samtools indexed sequences data files. You will need +#to create these data files and then create a coast_taxonomic_filters.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The coast_taxonomic_filters.loc +#file has this format (white space characters are TAB characters): +# +#value <name> <db_path> +# \ No newline at end of file
--- a/tool_data_table_conf.xml.sample Thu Jul 08 18:13:38 2021 +0000 +++ b/tool_data_table_conf.xml.sample Fri Jul 09 17:48:35 2021 +0000 @@ -8,4 +8,12 @@ <columns>value, name, path</columns> <file path="tool-data/blastdb.loc" /> </table> + <table name="blastdb" comment_char="#"> + <columns>value, name, path</columns> + <file path="tool-data/blastdb.loc" /> + </table> + <table name="diamond_database" comment_char="#"> + <columns>value, name, db_path</columns> + <file path="tool-data/diamond_database.loc" /> + </table> </tables> \ No newline at end of file