changeset 6:f064240f5e9c draft

"planemo upload commit 699e21438d7d173e81e8d60b5717dc1485785c7d-dirty"

--- a/macros.xml	Thu Jul 08 18:13:38 2021 +0000
+++ b/macros.xml	Fri Jul 09 17:48:35 2021 +0000
@@ -51,6 +51,12 @@
         "$db"
     ]]></token>
 
+    <xml name="protein_db_diamond">
+        <param name="db" type="select" optional="false" label="Diamond protein sequences database.">
+            <options from_data_table="diamond_database" />
+        </param>
+    </xml>
+
     <xml name="output_format">
         <param name="outfmt" type="select" optional="true" multiple="true" display="checkboxes" label="Select outputs">
             <option value="b" selected="true">Best Hits</option>

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/diamond_database.loc.sample	Fri Jul 09 17:48:35 2021 +0000
@@ -0,0 +1,9 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a coast_taxonomic_filters.loc file
+#similar to this one (store it in this directory) that points to 
+#the directories in which those files are stored. The coast_taxonomic_filters.loc
+#file has this format (white space characters are TAB characters):
+#
+#value	<name>	<db_path>
+#
\ No newline at end of file

--- a/tool_data_table_conf.xml.sample	Thu Jul 08 18:13:38 2021 +0000
+++ b/tool_data_table_conf.xml.sample	Fri Jul 09 17:48:35 2021 +0000
@@ -8,4 +8,12 @@
         <columns>value, name, path</columns>
         <file path="tool-data/blastdb.loc" />
     </table>
+	<table name="blastdb" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/blastdb.loc" />
+    </table>
+	<table name="diamond_database" comment_char="#">
+        <columns>value, name, db_path</columns>
+        <file path="tool-data/diamond_database.loc" />
+    </table>
 </tables>
\ No newline at end of file