Mercurial > repos > dfornika > screen_abricate_report

annotate test-data/screened_report.tsv @ 1:40003338a8e8 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
author dfornika
date Fri, 27 Sep 2019 13:31:43 -0400
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40003338a8e8 planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
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1 #FILE %IDENTITY END SEQUENCE COVERAGE_MAP %COVERAGE DATABASE ACCESSION START PRODUCT GAPS COVERAGE GENE
40003338a8e8 planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
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2 SRR9113479_assembly 100.00 990 32 =============== 100.00 card JX262694:1-814 178 card~~~NDM-7~~~JX262694:1-814 NDM-7 is a beta-lactamase found in Escherichia coli 0/0 1-813/813 NDM-7
40003338a8e8 planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
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3 SRR9113479_assembly 99.08 18189 25 ...........==== 23.89 card KT736121.1:1-2722 17540 card~~~OXA-368~~~KT736121.1:1-2722 OXA-368 is a beta-lactamase found in Aeromonas sobria. From the Lahey list of OXA beta-lactamases. 0/0 2072-2721/2721 OXA-368
40003338a8e8 planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/screen_abricate_report commit d9732cd3279d03dcc498bf2eb903f9e6120a9d85-dirty
dfornika
parents:
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4 SRR9113479_assembly 100.00 19084 25 =============== 100.00 card JN420336.1:1400-2231 18254 card~~~OXA-1~~~JN420336.1:1400-2231 OXA-1 is a beta-lactamase found in E. coli 0/0 1-831/831 OXA-1