Mercurial > repos > dfornika > pick_plasmids_containing_genes

annotate abricate_report_screening_files.loc.sample @ 3:50640b06fca5 draft

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"planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit 32f001f49f6e6fb64422a46907bd7293988d0832-dirty"
author dfornika
date Sat, 02 Nov 2019 01:36:30 -0400
parents ffa984b55de7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
1 # Expect three columns, tab separated, as follows:
ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
4 # - path (Path to the abricate report screening file (tsv format))
ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
5 #
ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
6 # e.g.
ffa984b55de7 "planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/pick_plasmids_containing_genes commit bf17791d0ee6756ebbd306614617f52034b8741c-dirty"
dfornika
parents:
diff changeset
7 # 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv