Mercurial > repos > dfornika > data_manager_build_mob_suite_database
changeset 14:5bb7917d691b draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mob_suite_database/ commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty
author | dfornika |
---|---|
date | Mon, 24 Jun 2019 14:10:30 -0400 |
parents | ca615c36f488 |
children | b2966fea70b0 |
files | data_manager/mob_suite_build_database.py |
diffstat | 1 files changed, 10 insertions(+), 1 deletions(-) [+] |
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--- a/data_manager/mob_suite_build_database.py Mon Jun 24 13:39:36 2019 -0400 +++ b/data_manager/mob_suite_build_database.py Mon Jun 24 14:10:30 2019 -0400 @@ -42,8 +42,17 @@ subprocess.check_call(['mob_cluster'] + mob_cluster_args_list, cwd=target_directory) + os.rename( + os.path.join(database_path, 'references_updated.fasta'), + os.path.join(database_path, 'ncbi_plasmid_full_seqs.fas') + ) + + print("Sleeping for 20s") + time.sleep(20) + print("Sleep ending") + makeblastdb_args_list = [ - '-in', database_path, + '-in', os.path.join(database_path, 'ncbi_plasmid_full_seqs.fas') '-dbtype', 'nucl', ]