Mercurial > repos > dfornika > data_manager_build_mob_suite_database
changeset 32:45c033d596f0 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mob_suite_database/ commit e01e33974da213b2df2bb12d3180a875567a60e4-dirty
| author | dfornika |
|---|---|
| date | Wed, 26 Jun 2019 15:44:07 -0400 |
| parents | 954d1fdde4d0 |
| children | ef3f3fd059fa |
| files | data_manager/mob_suite_build_database.py data_manager_conf.xml |
| diffstat | 2 files changed, 14 insertions(+), 14 deletions(-) [+] |
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--- a/data_manager/mob_suite_build_database.py Wed Jun 26 14:47:07 2019 -0400 +++ b/data_manager/mob_suite_build_database.py Wed Jun 26 15:44:07 2019 -0400 @@ -64,7 +64,7 @@ database_path, ] - subprocess.check_call(['bagit.py'] + bagit_args_list, cwd=target_directory) + subprocess.call(['bagit.py'] + bagit_args_list, cwd=target_directory) data_table_entry = { "data_tables": {
--- a/data_manager_conf.xml Wed Jun 26 14:47:07 2019 -0400 +++ b/data_manager_conf.xml Wed Jun 26 15:44:07 2019 -0400 @@ -1,18 +1,18 @@ <data_managers> <data_manager tool_file="data_manager/mob_suite_build_database.xml" id="mob_suite_build_database" version="1.4.9.1"> - <data_table name="mob_suite_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>#import os#${os.path.dirname($path)}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mob_suite_databases/#import os#${os.path.dirname($path)}</target> - </move> + <data_table name="mob_suite_databases"> + <output> + <column name="value"/> + <column name="name"/> + <column name="path" output_ref="out_file"> + <move type="directory"> + <source>#import os#${os.path.dirname($path)}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mob_suite_databases/#import os#${os.path.dirname($path)}</target> + </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mob_suite_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> </data_manager> </data_managers>