Mercurial > repos > dfornika > data_manager_build_mash_sketch
changeset 4:bb52c7f2c2a2 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty
| author | dfornika |
|---|---|
| date | Thu, 25 Jul 2019 13:55:23 -0400 |
| parents | b8681a7aab8e |
| children | f4bc3b60a16d |
| files | data_manager/mash_build_sketch.py data_manager/mash_build_sketch.xml |
| diffstat | 2 files changed, 3 insertions(+), 0 deletions(-) [+] |
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--- a/data_manager/mash_build_sketch.py Thu Jul 25 13:46:15 2019 -0400 +++ b/data_manager/mash_build_sketch.py Thu Jul 25 13:55:23 2019 -0400 @@ -64,6 +64,7 @@ parser.add_argument('--threads', dest='threads', default=1, help='threads' ) parser.add_argument('--kmer-size', dest='kmer_size', help='K-mer size' ) parser.add_argument('--sketch-size', dest='sketch_size', help='Sketch size' ) + parser.add_argument('--database-name', dest='database_name', help='Database Name') args = parser.parse_args() data_manager_input = json.loads(open(args.data_manager_json).read())
--- a/data_manager/mash_build_sketch.xml Thu Jul 25 13:46:15 2019 -0400 +++ b/data_manager/mash_build_sketch.xml Thu Jul 25 13:55:23 2019 -0400 @@ -13,12 +13,14 @@ --threads \${GALAXY_SLOTS:-1} --kmer-size ${kmer_size} --sketch-size ${sketch_size} + --database-name '${database_name}' ]]> </command> <inputs> <param name="input" type="data" format="fasta" label="Sequences to sketch" /> <param name="kmer_size" type="integer" min="1" max="32" value="21" label="K-mer size" /> <param name="sketch_size" type="integer" min="100" max="1000000" value="1000" label="Sketch size" /> + <param name="database_name" type="text" label="Database Name" /> </inputs> <outputs> <data name="out_file" format="data_manager_json" />