Mercurial > repos > dfornika > data_manager_build_mash_sketch
changeset 12:6df5ab590a1b draft default tip
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty
author | dfornika |
---|---|
date | Thu, 25 Jul 2019 16:32:29 -0400 |
parents | cc4b843d37f1 |
children | |
files | data_manager/mash_build_sketch.py |
diffstat | 1 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/mash_build_sketch.py Thu Jul 25 15:19:22 2019 -0400 +++ b/data_manager/mash_build_sketch.py Thu Jul 25 16:32:29 2019 -0400 @@ -7,6 +7,7 @@ import errno import json import os +import shutil import string import subprocess import sys @@ -33,12 +34,14 @@ pass else: raise - + + shutil.copyfile(mash_args['input'], os.path.join(target_directory, database_path, 'seqs.fasta')) + mash_sketch_args_list = [ '-p', mash_args['threads'], '-k', mash_args['kmer_size'], '-s', mash_args['sketch_size'], - '-i', mash_args['input'], + '-i', 'seqs.fasta', '-o', 'sketch', ]