comparison data_manager/mash_build_sketch.py @ 8:8c4654df4d58 draft

planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty

7:628353238ad1

            pass
        else:
            raise
    
    mash_sketch_args_list = [
        '-p', str(mash_args['threads']),
        '-k', str(mash_args['kmer_size']),
        '-s', str(mash_args['sketch_size']),
        '-i', mash_args['input'],
        '-o', 'sketch',
    ]
        
    subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list,
                          cwd=os.path.join(target_directory, database_path))
    
    bagit_args_list = [
        database_path,
    ]

8:8c4654df4d58

            pass
        else:
            raise
    
    mash_sketch_args_list = [
        '-p', mash_args['threads'],
        '-k', mash_args['kmer_size'],
        '-s', mash_args['sketch_size'],
        '-i', mash_args['input'],
        '-o', 'sketch',
    ]
        
    subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list,
                          cwd=str(os.path.join(target_directory, database_path)))
    
    bagit_args_list = [
        database_path,
    ]