Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 27:e5ce69466699 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Tue, 05 Mar 2019 16:45:10 -0500
parents d9a8795a29cd
children b400ae4d47cc
files data_manager/kraken2_build_minikraken.py
diffstat 1 files changed, 7 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_minikraken.py	Tue Mar 05 15:55:58 2019 -0500
+++ b/data_manager/kraken2_build_minikraken.py	Tue Mar 05 16:45:10 2019 -0500
@@ -48,6 +48,13 @@
     run(['wget'] + args, target_directory)
 
     args = [
+        '-p',
+        database_path,
+    ]
+
+    run(['mkdir'] + args, target_directory)
+    
+    args = [
         '-xvzf',
         'minikraken2_' + minikraken2_version + '_8GB.tgz',
         '-C',