Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 44:640c64962a45 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 5629d9d7d9836d32b1e501277e213ef213de3e76-dirty
author dfornika
date Thu, 02 May 2019 19:27:42 -0400
parents d59c327e9d0b
children 86a86acfa13c
files data_manager/kraken2_build_database.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.xml	Thu May 02 18:32:43 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Thu May 02 19:27:42 2019 -0400
@@ -21,9 +21,9 @@
             --minikraken2-version ${database_type.minikraken2_version}
           #else if $database_type.database_type == "standard"
             --threads \${GALAXY_SLOTS:-1}
-            --kmer-len ${kmer_len}
-            --minimizer-len ${minimizer_len}
-            --minimizer-spaces ${minimizer_spaces}
+            --kmer-len ${database_type.kmer_len}
+            --minimizer-len ${database_type.minimizer_len}
+            --minimizer-spaces ${database_type.minimizer_spaces}
           #end if
     ]]>
     </command>
@@ -45,7 +45,7 @@
                 </param>
             </when>
             <when value="special">
-                <param name="db_type" type="select" multiple="false" label="Select database to build">
+                <param name="special_database_type" type="select" multiple="false" label="Select database to build">
                     <option value="greengenes">Greengenes</option>
                     <option value="silva">Silva</option>
                     <option value="rdp">RDP</option>