Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 13:48c013603913 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 682a16af9bce01ff23176dbce291034d67947e58-dirty
author dfornika
date Thu, 28 Feb 2019 01:38:45 -0500
parents 412d72bbd9e6
children 25298e35048f
files data_manager/kraken2_build_standard.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_standard.py	Thu Feb 28 01:35:42 2019 -0500
+++ b/data_manager/kraken2_build_standard.py	Thu Feb 28 01:38:45 2019 -0500
@@ -22,9 +22,9 @@
         'kraken2-build',
         '--threads', "${GALAXY_SLOTS:-1}",
         '--standard',
-        '--kmer-len', kmer_len,
-        '--minimizer-len', minimizer_len,
-        '--minimizer-spaces', minimizer_spaces,
+        '--kmer-len', str(kmer_len),
+        '--minimizer-len', str(minimizer_len),
+        '--minimizer-spaces', str(minimizer_spaces),
         '--db', database_name
     ]
     proc = subprocess.Popen(args=args, shell=False, cwd=target_directory)