Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 25:370d5fee9c76 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Tue, 05 Mar 2019 15:41:56 -0500
parents 7233538ef3cb
children d9a8795a29cd
files data_manager/kraken2_build_minikraken.py data_manager/kraken2_build_minikraken.xml
diffstat 2 files changed, 6 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_minikraken.py	Tue Mar 05 15:10:42 2019 -0500
+++ b/data_manager/kraken2_build_minikraken.py	Tue Mar 05 15:41:56 2019 -0500
@@ -48,7 +48,10 @@
     run(['wget'] + args, target_directory)
 
     args = [
-        '-xvzf', 'minikraken2_' + minikraken2_version + '_8GB.tgz'
+        '-xvzf',
+        'minikraken2_' + minikraken2_version + '_8GB.tgz'
+        '-C',
+        database_path,
     ]
 
     run(['tar'] + args, target_directory)
--- a/data_manager/kraken2_build_minikraken.xml	Tue Mar 05 15:10:42 2019 -0500
+++ b/data_manager/kraken2_build_minikraken.xml	Tue Mar 05 15:41:56 2019 -0500
@@ -14,9 +14,9 @@
     ]]>
     </command>
     <inputs>
-        <param name="minikraken2_version" type="select" multiple="false" label="Select MiniKraken2 database version to download">
+      <param name="minikraken2_version" type="select" multiple="false" label="Select MiniKraken2 database version to download">
+	    <option value="v2">Version 2</option>
             <option value="v1">Version 1</option>
-	    <option value="v2">Version 2</option>
         </param>
     </inputs>
     <outputs>