Mercurial > repos > dfornika > data_manager_build_kraken2_database
changeset 32:23c68bbf573d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 5629d9d7d9836d32b1e501277e213ef213de3e76-dirty
| author | dfornika |
|---|---|
| date | Tue, 30 Apr 2019 14:30:24 -0400 |
| parents | bb9833a41c6a |
| children | eb123ede1812 |
| files | data_manager_conf.xml |
| diffstat | 1 files changed, 1 insertions(+), 49 deletions(-) [+] |
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--- a/data_manager_conf.xml Tue Apr 30 14:16:12 2019 -0400 +++ b/data_manager_conf.xml Tue Apr 30 14:30:24 2019 -0400 @@ -1,5 +1,5 @@ <data_managers> - <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> + <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="1.0"> <data_table name="kraken2_databases"> <output> <column name="value"/> @@ -15,52 +15,4 @@ </output> </data_table> </data_manager> - <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> - <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> - <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0"> - <data_table name="kraken2_databases"> - <output> - <column name="value"/> - <column name="name"/> - <column name="path" output_ref="out_file"> - <move type="directory"> - <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> - </output> - </data_table> - </data_manager> </data_managers>