Mercurial > repos > dfornika > data_manager_build_bracken_database

changeset 17:8de8fb31a892 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bracken_database/ commit 57b36cfbdd1663aef43d03b76e37364cc5bdeef3-dirty"
author dfornika
date Thu, 04 Nov 2021 22:35:31 +0000
parents 71668d1d0500
children 66e2c6f34391
files data_manager/bracken_build_database.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/bracken_build_database.xml	Thu Nov 04 22:27:34 2021 +0000
+++ b/data_manager/bracken_build_database.xml	Thu Nov 04 22:35:31 2021 +0000
@@ -17,12 +17,12 @@
           --kraken-db '$db_dir'
           --threads \${GALAXY_SLOTS:-1}
           #if $check_prebuilt.prebuilt == "no"
-              --kmer-len ${kmer_len}
+              --kmer-len ${check_prebuilt.kmer_len}
           #end if
           # if $check_prebuilt.prebuilt == "yes"
               --prebuilt
           #end if
-          --read-len ${read_len}
+          --read-len ${check_prebuilt.read_len}
           --database-name '${database_name}'
     ]]>
     </command>