Mercurial > repos > dfornika > data_manager_build_bracken_database

changeset 21:09825e7c8b05 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bracken_database/ commit 57b36cfbdd1663aef43d03b76e37364cc5bdeef3-dirty"
author dfornika
date Thu, 04 Nov 2021 23:00:43 +0000
parents 4ee8002597d2
children
files data_manager/bracken_build_database.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/bracken_build_database.xml	Thu Nov 04 22:52:51 2021 +0000
+++ b/data_manager/bracken_build_database.xml	Thu Nov 04 23:00:43 2021 +0000
@@ -14,12 +14,14 @@
         ln -s '${kraken_db.fields.path}/*' '$db_dir/' &&
         python '$__tool_directory__/bracken_build_database.py'
           '${out_file}'
-          --kraken-db '$db_dir'
+          
           --threads \${GALAXY_SLOTS:-1}
           #if $check_prebuilt.prebuilt == "no"
+              --kraken-db '$db_dir'
               --kmer-len ${check_prebuilt.kmer_len}
           #end if
           #if $check_prebuilt.prebuilt == "yes"
+              --kraken-db '${kraken_db.fields.path}'
               --prebuilt
           #end if
           --read-len ${check_prebuilt.read_len}