Mercurial > repos > dfornika > chewbbaca_allelecall
changeset 3:774ebd2b0ed1 draft
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
author | dfornika |
---|---|
date | Fri, 24 Jan 2020 19:31:46 +0000 |
parents | 7a048a2ed2e7 |
children | 964efa81f01c |
files | chewbbaca_allelecall.xml |
diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/chewbbaca_allelecall.xml Fri Jan 24 17:43:33 2020 +0000 +++ b/chewbbaca_allelecall.xml Fri Jan 24 19:31:46 2020 +0000 @@ -5,9 +5,10 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ chewBBACA.py AlleleCall - --threads \${GALAXY_SLOTS:-1} + --cpu \${GALAXY_SLOTS:-1} -i '${assembly}' - --bsr '${min_bsr}' + --ptf '${prodigal_training_file_source.prodigal_training_file.fields.path}' + --min_bsr ${min_bsr} --st '${size_threshold}' ]]> </command> @@ -37,8 +38,6 @@ <param name="min_bsr" type="float" value="0.6" optional="true" label="minimum BSR score" /> <param name="size_threshold" type="float" min="0.0" value="0.2" max="1.0" optional="true" label="Size threshold" /> </inputs> - - <!-- define outputs --> <outputs> <data format="tabular" name="statistics" label="${tool.name}: on ${on_string}: Statistics" /> <data format="tabular" name="contigs_info" label="${tool.name}: on ${on_string}: Contigs Info" />