Mercurial > repos > dfornika > blast_report_basic
changeset 6:b8a3578b6445 draft
Uploaded
author | dfornika |
---|---|
date | Tue, 03 Mar 2020 05:33:55 +0000 |
parents | c7ce2cd96546 |
children | 445a1923bb97 |
files | blast_report_basic.xml |
diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/blast_report_basic.xml Tue Mar 03 01:16:59 2020 +0000 +++ b/blast_report_basic.xml Tue Mar 03 05:33:55 2020 +0000 @@ -3,9 +3,10 @@ <command> <![CDATA[ python '${__tool_directory__}/blast_report.py' - -f ${filter_pident}:$filter_kws + --min-identity ${min_identity} + --filter-keywords '${filter_kws}' #if str($bins) != "None" - -b "${bins}" + -b '${bins}' #end if $discard_redundant '${tabular_blast_report_input}' @@ -16,7 +17,7 @@ </command> <inputs> <param name="tabular_blast_report_input" type="data" format="tabular" label="Tabular BLAST results (extended 26 columns)"/> - <param name="filter_pident" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/> + <param name="min_identity" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/> <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/> <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes"> <options from_data_table="blast_reference_bins">